other:
Article Title: African swine fever virus transmembrane protein pEP84R guides core assembly.
Article Snippet: The sources of the mouse mAbs for host cell markers and tag epitopes were as follows: anti- β-Actin (clone AC-15, Sigma), anti-CD63 (H5C6, DSHB, University of Iowa), anti-PDI (1D3, Enzo Life Sciences), anti-ERGIC-53 (OTI1A8, Enzo Life Sciences); anti-GM130 (35/GM130, BD Transduction Laboratories), anti-DNA (IgM Ac 30–10, Sigma), anti-Flag (M2, Sigma), anti-V5 (clone V5-10, Sigma).
Article Title: Anti-liver fibrotic effects of small extracellular vesicle microRNAs from human umbilical cord-derived mesenchymal stem cells and their differentiated hepatocyte-like cells.
Article Snippet: Objective The aim of this study is to identify therapeutic cargos within mesenchymal stem cell (MSC)-derived small extracellular vesicles (sEVs) for the treatment of liver fibrosis, a condition that poses significant health risks.. Results sEVs from human umbilical cordderived MSCs (UCMSCs) and their differentiated hepatocyte-like cells (hpUCMSCs) were found to alleviate liver fibrosis in mouse models, reduce fibrogenic gene expression in the liver, and inhibit hepatic stellate cell (HSC) activation, a central driver of liver fibrosis, in vitro.. Deep sequencing identified differentially abundant microRNAs (miRNAs) (high-abundance: 57, low-abundance: 22) in both UCMSCand hpUCMSC-derived sEVs, compared to HeLa cell-derived sEVs, which lack anti-liver fibrotic activity.
Labeling:
Bioprocessing:Article Title: Chemo‐small extracellular vesicles released in cisplatin‐resistance ovarian cancer cells are regulated by the lysosomal function
Article Snippet: .. The following monoclonal antibodies were used: anti‐ALIX (cat# sc‐53540), anti‐RAB7 (cat# sc‐376362), anti‐RAB11A (cat# sc‐166912) and anti‐β‐actin (cat# sc‐47778) from Santa Cruz Biotechnology (Dallas, TX, USA); anti‐CD63 (cat# ab8219), anti‐GRP94 (cat# ab90458), anti‐RAB22A (cat# ab137093), anti‐TSG101 (cat# ab83) and anti‐ULK1 (cat#ab128859) from Abcam (Cambridge, UK); anti‐LAMP1 clone H4A3 (cat# DSHB‐H4A3) from Developmental Studies Hybridoma Bank (Iowa City, IA, USA); anti‐GM130 (cat# 610823) and anti‐TSG101 (cat# 612696) from BD Bioscience (Becton, NJ, USA); anti‐Syntenin 1 (cat# NBP2‐76873) from Novous Biological (Littleton, Ontario, Canada); anti‐ULK1 S317 (cat# 127535) from Cell Signaling Technology (Danvers, MA, USA). .. The following polyclonal antibodies: anti‐Cathepsin D (cat# AF1014) from R&D Systems (Minneapolis, MN, USA); anti‐CD63 (cat# AM11837) from Ango (San Ramon, CA, USA); anti‐HGS (HRS) (cat# ab15539) from Abcam; anti‐LAMP2A clone AMC2 (cat# 51–2200) from GibcoTM ThermoFisher Scientific (Waltham, MA, USA); anti‐RAB35 (cat# 9690) from Cell Signaling Technology; anti‐RAB27A (cat# 168013) from Synaptic Systems (Göttingen, Germany).
Western Blot:Article Title: The Parkinson’s Disease related mutant VPS35 (D620N) amplifies the LRRK2 response to endolysosomal stress
Article Snippet: .. Antibodies and other reagents are as follows: anti-actin (1:10 000 WB, Proteintech; 66009-1-IG), anti-actin (1:2000 WB, Proteintech; 20536-1-AP), anti-actin (1:2000 WB, Sigma–Aldrich; A2066), anti-ALIX (1:1000 WB, 1:500 IF, Santa Cruz Biotechnology; sc-53540), anti-Cathepsin D (1:2000 WB, Calbiochem; 219361), anti-CD63 (1:500 IF, Developmental Studies Hybridoma Bank H5C6), anti-CHMP2B (1:500 IF, abcam ab157208), anti-CIM6PR (1:1000 WB, 1:500 IF, gift from Paul Luzio), anti-EEA1 (1:500 IF, BD Biosciences; 610456), anti-FAM21C (1:1000 IF, Merck; ABT79), anti-HA (1:1000 WB, Covance; MMS-101P), anti-HA (1:400 IF, Novus Biotechne; NB600-362), anti-HA (1:500 IF, Roche; 11867423001), anti-LAMP1 (1:1000 WB, 1:500 IF, Cell Signalling Technology; 9091), anti-LAMP1 (1:200 IF, Developmental Studies Hybridoma Bank H4A3), anti-LC3 (1:200 WB, 1:200 IF, Nanotools; 5F10), anti-p62 (1:1000 WB, BD Biosciences; 610833), anti-phosphoRab10 T73 (1 mg/ml WB, abcam; ab230261), anti-phosphoRab12 S106 (1:1000 WB, abcam ab256487), anti-Rab10 total (1:1000 WB, Cell Signalling Technology; 8127), anti-Rab12 total (1 mg/ml WB, MRC PPU SA227), anti-Sortilin (1:1000 WB, 1:1000 IF, abcam; ab16640), anti-TGN46 (1:500 IF, Bio-Rad; AHP500), anti-VPS26A IF, WB (1:1000 WB, 1:800 IF, abcam; ab23892), anti-VPS35 (1:1000 WB, abcam; ab10099), anti-WASHC1 (1:2000 WB, Sigma–Aldrich HPA002689), apilimod dimesylate (Tocris Bioscience; 7283), blasticidin S (Invitrogen; R21001), chloroquine diphosphate salt (Sigma–Aldrich; C6628), concanamycin A (Sigma–Aldrich; C9705), doxycycline hyclate (Sigma–Aldrich; R25005), G-418 solution (Roche; Figure 5. ..
Article Title: The Parkinson’s Disease related mutant VPS35 (D620N) amplifies the LRRK2 response to endolysosomal stress
Article Snippet: .. Antibodies and other reagents are as follows: anti-actin (1:10,000 WB, Proteintech; 66009-1-IG), anti-actin (1:2,000 WB, Proteintech; 20536-1-AP), anti-actin (1:2,000 WB, Sigma-Aldrich; A2066), anti-ALIX (1:1,000 WB, 1:500 IF, Santa Cruz Biotechnology; sc-53540), anti-Cathepsin D (1:2,000 WB, Calbiochem; 219361), anti-CD63 (1:500 IF, Developmental Studies Hybridoma Bank H5C6), anti-CHMP2B (1:500 IF, abcam ab157208), anti-CIM6PR (1:1,000 WB, 1:500 IF, gift from Paul Luzio), anti-EEA1 (1:500 IF, BD Biosciences; 610456), anti-FAM21C (1:1,000 IF, Merck; ABT79), anti-HA (1:1000 WB, Covance; MMS-101P), anti-HA (1:400 IF, Novus Biotechne; NB600-362), anti-HA (1:500 IF, Roche; 11867423001), anti-LAMP1 (1:1,000 WB, 1:500 IF, Cell Signalling Technology; 9091), anti-LAMP1 (1:200 IF, Developmental Studies Hybridoma Bank H4A3), anti-LC3 (1:200 WB, 1:200 IF, Nanotools; 5F10), anti-p62 (1:1,000 WB, BD Biosciences; 610833), anti-phosphoRab10 T73 (1 μ g/ml WB, abcam; ab230261), anti-phosphoRab12 S106 (1:1,000 WB, abcam ab256487), anti-Rab10 total (1:1000 WB, Cell Signalling Technology; 8127), anti-Rab12 total (1 μ g/ml WB, MRC PPU SA227), anti-Sortilin (1:1,000 WB, 1:1,000 IF, abcam; ab16640), anti-TGN46 (1:500 IF, Biorad; AHP500), anti-VPS26A IF, WB (1:1,000 WB, 1:800 IF, abcam; ab23892), anti-VPS35 (1:1000 WB, abcam; ab10099), anti-WASHC1 (1:2,000 WB, Sigma-Aldrich HPA002689), apilimod dimesylate (Tocris Bioscience; 7283), blasticidin S (Invitrogen; R21001), chloroquine diphosphate salt (Sigma-Aldrich; C6628), concanamycin A (Sigma-Aldrich; C9705), doxycycline hyclate (Sigma-Aldrich; R25005), G-418 solution (Roche; 4727878001), L-Leucyl-L-Leucine methyl ester (LLOMe) hydrochloride (Cayman Chemical; CAY16008), MLi-2 (Tocris Bioscience; 5756), nigericin sodium salt (Sigma-Aldrich; N7143), puromycin dihydrochloride (Sigma-Aldrich; P7255), Zeocin (Invitrogen; R25005). .. hTERT-RPE1-Flp-In-Parental (hTERT-RPE1-FRT-TREX, kind gift from Jon Pines, ICR, London) cells were cultured in Dulbecco’s modified Eagle medium DMEM/F12 with GlutaMAX (Gibco; 31331093) supplemented with 10% FBS (Gibco; 10270106) and 1% non-essential amino acids (Gibco; 11150035). hTERT-RPE1-Flp-In-HA-VPS35 cells were maintained as above in the presence of 200 μ g/ml G418 (Sigma; 4727878001) and 5 μ g/ml blasticidin (Thermo Fisher Scientific; R21001).
Article Title: The Parkinson's disease related mutant VPS35 (D620N) amplifies the LRRK2 response to endolysosomal stress
Article Snippet: .. Antibodies and other reagents are as follows: anti-actin (1:10 000 WB, Proteintech; 66009-1-IG), anti-actin (1:2000 WB, Proteintech; 20536-1-AP), anti-actin (1:2000 WB, Sigma–Aldrich; A2066), anti-ALIX (1:1000 WB, 1:500 IF, Santa Cruz Biotechnology; sc-53540), anti-Cathepsin D (1:2000 WB, Calbiochem; 219361), anti-CD63 (1:500 IF, Developmental Studies Hybridoma Bank H5C6), anti-CHMP2B (1:500 IF, abcam ab157208), anti-CIM6PR (1:1000 WB, 1:500 IF, gift from Paul Luzio), anti-EEA1 (1:500 IF, BD Biosciences; 610456), anti-FAM21C (1:1000 IF, Merck; ABT79), anti-HA (1:1000 WB, Covance; MMS-101P), anti-HA (1:400 IF, Novus Biotechne; NB600-362), anti-HA (1:500 IF, Roche; 11867423001), anti-LAMP1 (1:1000 WB, 1:500 IF, Cell Signalling Technology; 9091), anti-LAMP1 (1:200 IF, Developmental Studies Hybridoma Bank H4A3), anti-LC3 (1:200 WB, 1:200 IF, Nanotools; 5F10), anti-p62 (1:1000 WB, BD Biosciences; 610833), anti-phosphoRab10 T73 (1 μg/ml WB, abcam; ab230261), anti-phosphoRab12 S106 (1:1000 WB, abcam ab256487), anti-Rab10 total (1:1000 WB, Cell Signalling Technology; 8127), anti-Rab12 total (1 μg/ml WB, MRC PPU SA227), anti-Sortilin (1:1000 WB, 1:1000 IF, abcam; ab16640), anti-TGN46 (1:500 IF, Bio-Rad; AHP500), anti-VPS26A IF, WB (1:1000 WB, 1:800 IF, abcam; ab23892), anti-VPS35 (1:1000 WB, abcam; ab10099), anti-WASHC1 (1:2000 WB, Sigma–Aldrich HPA002689), apilimod dimesylate (Tocris Bioscience; 7283), blasticidin S (Invitrogen; R21001), chloroquine diphosphate salt (Sigma–Aldrich; C6628), concanamycin A (Sigma–Aldrich; C9705), doxycycline hyclate (Sigma–Aldrich; R25005), G-418 solution (Roche; 4727878001), LLOMe hydrochloride (Cayman Chemical; CAY16008), MLi-2 (Tocris Bioscience; 5756), nigericin sodium salt (Sigma–Aldrich; N7143), puromycin dihydrochloride (Sigma–Aldrich; P7255), Zeocin (Invitrogen; R25005). .. Antibodies and other reagents are as follows: anti-actin (1:10 000 WB, Proteintech; 66009-1-IG), anti-actin (1:2000 WB, Proteintech; 20536-1-AP), anti-actin (1:2000 WB, Sigma–Aldrich; A2066), anti-ALIX (1:1000 WB, 1:500 IF, Santa Cruz Biotechnology; sc-53540), anti-Cathepsin D (1:2000 WB, Calbiochem; 219361), anti-CD63 (1:500 IF, Developmental Studies Hybridoma Bank H5C6), anti-CHMP2B (1:500 IF, abcam ab157208), anti-CIM6PR (1:1000 WB, 1:500 IF, gift from Paul Luzio), anti-EEA1 (1:500 IF, BD Biosciences; 610456), anti-FAM21C (1:1000 IF, Merck; ABT79), anti-HA (1:1000 WB, Covance; MMS-101P), anti-HA (1:400 IF, Novus Biotechne; NB600-362), anti-HA (1:500 IF, Roche; 11867423001), anti-LAMP1 (1:1000 WB, 1:500 IF, Cell Signalling Technology; 9091), anti-LAMP1 (1:200 IF, Developmental Studies Hybridoma Bank H4A3), anti-LC3 (1:200 WB, 1:200 IF, Nanotools; 5F10), anti-p62 (1:1000 WB, BD Biosciences; 610833), anti-phosphoRab10 T73 (1 μg/ml WB, abcam; ab230261), anti-phosphoRab12 S106 (1:1000 WB, abcam ab256487), anti-Rab10 total (1:1000 WB, Cell Signalling Technology; 8127), anti-Rab12 total (1 μg/ml WB, MRC PPU SA227), anti-Sortilin (1:1000 WB, 1:1000 IF, abcam; ab16640), anti-TGN46 (1:500 IF, Bio-Rad; AHP500), anti-VPS26A IF, WB (1:1000 WB, 1:800 IF, abcam; ab23892), anti-VPS35 (1:1000 WB, abcam; ab10099), anti-WASHC1 (1:2000 WB, Sigma–Aldrich HPA002689), apilimod dimesylate (Tocris Bioscience; 7283), blasticidin S (Invitrogen; R21001), chloroquine diphosphate salt (Sigma–Aldrich; C6628), concanamycin A (Sigma–Aldrich; C9705), doxycycline hyclate (Sigma–Aldrich; R25005), G-418 solution (Roche; 4727878001), LLOMe hydrochloride (Cayman Chemical; CAY16008), MLi-2 (Tocris Bioscience; 5756), nigericin sodium salt (Sigma–Aldrich; N7143), puromycin dihydrochloride (Sigma–Aldrich; P7255), Zeocin (Invitrogen; R25005).
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